EcoSeek Genominer
Population-genetic candidate species, reference genomes, and clean VCFs for landscape-genetic / refugia analyses.
Population-genetic candidate species, reference genomes, and clean VCFs for landscape-genetic / refugia analyses.
| Species | Genus | Score | Markers | Continents | Flags | Downloads |
|---|---|---|---|---|---|---|
| Lycaena hippothoe | Lycaena | 90.0 | microsatellite | Europe, North America | ref_genome | |
| Lycaena helle | Lycaena | 50.0 | microsatellite,mtDNA | Europe, North America | ref_genome | |
| Lycaena bleusei | Lycaena | 25.0 | mtDNA | Europe, North America | ref_genome | |
| Lycaena tityrus | Lycaena | 25.0 | mtDNA | Europe, North America | ref_genome |
| Dataset | Binomial | Type | Samples | Variants | Size | Downloads |
|---|---|---|---|---|---|---|
| acer_saccharum | Acer saccharum | clean_biallelic_snps | 1 | 9158129 | 325.3 MB | VCFpopmapG'STmetrics |
| biswas2026_truculentus_wgs | Thrigmopoeus truculentus | clean_biallelic_snps | 30 | 249885 | 20.0 MB | VCFG'STFST |
| bombus_balteatus_wgs | Bombus balteatus | clean_biallelic_snps | 40 | 7024680 | 589.6 MB | VCFpopmapmetrics |
| bombus_terrestris | Bombus terrestris | clean_biallelic_snps | 28 | 13612996 | 559.1 MB | VCFpopmapG'STmetrics |
| bono2018_reference | Sciurus aberti | clean_biallelic_snps | 92 | 125622 | 37.0 MB | VCFFST |
| bono2018_reference | Sciurus aberti | clean_biallelic_snps | 92 | 615320 | 126.8 MB | VCFFST |
| bono2018_stacks | Sciurus aberti | other | 92 | 70914 | 69.2 MB | VCF |
| canis_aureus | Canis aureus | clean_biallelic_snps | 6 | 13976432 | 466.8 MB | VCFpopmapG'STmetrics |
| desmognathus_wrighti | Desmognathus wrighti | clean_biallelic_snps | 14 | 834 | 2.7 MB | VCFpopmapG'STmetrics |
| fusco2024_carolinensis_full | Sciurus carolinensis | clean_biallelic_snps | 403 | 7588480 | 2.8 GB | VCFpopmapG'STFST |
| fusco2024_carolinensis_pilot | Sciurus carolinensis | clean_biallelic_snps | 50 | 174035 | 20.3 MB | VCFpopmapG'STFST |
| fusco2024_carolinensis_pilot | Sciurus carolinensis | clean_biallelic_snps | 50 | 2427587 | 317.3 MB | VCFpopmapG'STFST |
| gulo_gulo | Gulo gulo | clean_biallelic_snps | 12 | 1295424 | 53.6 MB | VCFpopmapG'STmetrics |
| juniperus_communis | Juniperus communis | clean_biallelic_snps | 6 | 2993523 | 75.3 MB | VCFpopmapG'STmetrics |
| lepus_americanus | Lepus americanus | clean_biallelic_snps | 10 | 35899274 | 1.1 GB | VCFpopmapG'STmetrics |
| lepus_californicus | Lepus californicus | clean_biallelic_snps | 5 | 72458961 | 2.9 GB | VCFpopmapG'STmetrics |
| lepus_europaeus | Lepus europaeus | clean_biallelic_snps | 3 | 30845573 | 1.1 GB | VCFpopmapG'STmetrics |
| lepus_timidus_wgs | Lepus timidus | raw_variants | 0 | 0.0 B | VCFpopmap | |
| odocoileus_hemionus_wgs | Odocoileus hemionus | clean_biallelic_snps | 29 | 37427568 | 2.4 GB | VCFpopmapmetrics |
| odocoileus_virginianus | Odocoileus virginianus | clean_biallelic_snps | 30 | 92802336 | 5.8 GB | VCFpopmapG'STmetrics |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | other | 110 | 37 | 97.9 KB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 10778 | 5.0 MB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 10931 | 1.1 MB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 6267 | 744.8 KB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 7496 | 2.2 MB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 7588 | 540.5 KB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 20361 | 1.3 MB | VCFpopmapG'STFST |
| plethodon_cinereus | Plethodon cinereus | clean_biallelic_snps | 3 | 316150 | 25.1 MB | VCFpopmapG'ST |
| plethodon_cinereus_wgs | Plethodon cinereus | raw_variants | 3 | 2223052 | 63.0 MB | VCFpopmapG'ST |
| populus_tremuloides | Populus tremuloides | clean_biallelic_snps | 1 | 10522216 | 307.8 MB | VCFpopmapG'STmetrics |
| quercus_canariensis_wgs | Quercus canariensis | clean_biallelic_snps | 2 | 15799925 | 529.1 MB | VCFpopmapmetrics |
| quercus_lobata | Quercus lobata | clean_biallelic_snps | 34 | 14638769 | 714.0 MB | VCFpopmapG'STmetrics |
| quercus_macrocarpa_wgs | Quercus macrocarpa | clean_biallelic_snps | 11 | 30498576 | 1.2 GB | VCFpopmapmetrics |
| quercus_rubra | Quercus rubra | clean_biallelic_snps | 29 | 52972777 | 3.5 GB | VCFpopmapG'STmetrics |
| quercus_rubra_wgs | Quercus rubra | other | 29 | 693115 | 32.6 MB | VCFpopmapG'STmetrics |
GET /api/catalog?q=...&genus=...&has_vcf=true&limit=100
GET /api/candidates
GET /api/facets
GET /api/vcfs
GET /api/download/<relative_path>