EcoSeek Genominer
Population-genetic candidate species, reference genomes, and clean VCFs for landscape-genetic / refugia analyses.
Population-genetic candidate species, reference genomes, and clean VCFs for landscape-genetic / refugia analyses.
| Species | Genus | Score | Markers | Continents | Flags | Downloads |
|---|---|---|---|---|---|---|
| Quercus rubra | Quercus | 551.0 | SNP,STR | Europe, North America | coords gbif ref_genome reduced_rep_coords | VCFpopmapG'STmetrics |
| Quercus rubra | Quercus | 551.0 | SNP,STR | Europe, North America | coords gbif ref_genome reduced_rep_coords | VCFpopmapG'STmetrics |
| Acer saccharum | Acer | 549.0 | SNP | Europe, North America | coords gbif ref_genome | VCFpopmapG'STmetrics |
| Populus tremuloides | Populus | 549.0 | SNP | Europe, North America | coords gbif ref_genome reduced_rep_coords | VCFpopmapG'STmetrics |
| Betula papyrifera | Betula | 549.0 | SNP | Europe, North America | gbif ref_genome | |
| Betula platyphylla | Betula | 281.0 | WGS,microsatellite | Europe, North America | coords ref_genome | |
| Canis aureus | Canis | 264.0 | microsatellite,mtDNA | Europe, North America | gbif ref_genome | VCFpopmapG'STmetrics |
| Gulo gulo | Gulo | 240.0 | microsatellite,mtDNA | Europe, North America | gbif ref_genome | VCFpopmapG'STmetrics |
| Quercus engelmannii | Quercus | 225.0 | microsatellite | Europe, North America | coords ref_genome reduced_rep_coords | |
| Quercus segoviensis | Quercus | 225.0 | microsatellite | Europe, North America | ref_genome | |
| Bombus balteatus | Bombus | 225.0 | microsatellite | Europe, North America | coords ref_genome wgs_coords | VCFpopmapmetrics |
| Quercus macrocarpa | Quercus | 216.0 | SNP | Europe, North America | coords ref_genome wgs_coords reduced_rep_coords | VCFpopmapmetrics |
| Quercus lobata | Quercus | 182.0 | WGS,microsatellite | Europe, North America | coords gbif ref_genome wgs_coords reduced_rep_coords | VCFpopmapG'STmetrics |
| Plethodon cinereus | Plethodon | 180.0 | microsatellite | North America | coords gbif ref_genome reduced_rep_coords | VCFpopmapG'ST |
| Plethodon cinereus | Plethodon | 180.0 | microsatellite | North America | coords gbif ref_genome reduced_rep_coords | VCFpopmapG'ST |
| Poecile hudsonicus | Poecile | 180.0 | microsatellite,mtDNA | Europe, North America | ref_genome | |
| Quercus canariensis | Quercus | 175.0 | microsatellite | Europe, North America | ref_genome | VCFpopmapmetrics |
| Quercus faginea | Quercus | 175.0 | microsatellite | Europe, North America | coords ref_genome reduced_rep_coords | |
| Bombus terrestris | Bombus | 161.0 | RADseq,mtDNA | Europe, North America | coords gbif ref_genome | VCFpopmapG'STmetrics |
| Juniperus communis | Juniperus | 159.0 | microsatellite | Europe, North America | gbif ref_genome | VCFpopmapG'STmetrics |
| Larix sibirica | Larix | 159.0 | microsatellite | Europe, North America | gbif ref_genome | |
| Quercus alba | Quercus | 156.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus deserticola | Quercus | 156.0 | microsatellite | Europe, North America | ref_genome | |
| Populus koreana | Populus | 156.0 | microsatellite | Europe, North America | ref_genome | |
| Pinus pungens | Pinus | 154.0 | RADseq | Europe, North America | ref_genome | VCFpopmapG'STFST |
| Pinus pungens | Pinus | 154.0 | RADseq | Europe, North America | ref_genome | VCFpopmapG'STFST |
| Pinus pungens | Pinus | 154.0 | RADseq | Europe, North America | ref_genome | VCFpopmapG'STFST |
| Picoides villosus | Picoides | 152.0 | microsatellite,mtDNA | Europe, North America | ref_genome | |
| Picea crassifolia | Picea | 150.0 | SNP | Europe, North America | ref_genome | |
| Quercus chrysolepis | Quercus | 150.0 | microsatellite | Europe, North America | ref_genome | |
| Pinus durangensis | Pinus | 147.0 | microsatellite | Europe, North America | ref_genome | |
| Pinus martinezii | Pinus | 147.0 | microsatellite | Europe, North America | ref_genome | |
| Felis chaus | Felis | 135.0 | mtDNA | Europe, North America | ref_genome | |
| Pinus exhibits | Pinus | 132.0 | allozyme | Europe, North America | ref_genome | |
| Picea asperata | Picea | 120.0 | WGS | Europe, North America | ref_genome | |
| Tsuga dumosa | Tsuga | 117.0 | mtDNA | Europe, North America | none | |
| Picoides pubescens | Picoides | 114.0 | microsatellite,mtDNA | Europe, North America | ref_genome | |
| Salix nigra | Salix | 112.0 | SNP | Europe, North America | ref_genome | |
| Salix genus | Salix | 112.0 | SNP | Europe, North America | ref_genome | |
| Alnus cordata | Alnus | 108.0 | microsatellite | Europe, North America | ref_genome | |
| Alnus glutinosa | Alnus | 108.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus castanea | Quercus | 104.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus insignis | Quercus | 104.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus sapotifolia | Quercus | 104.0 | microsatellite | Europe, North America | ref_genome | |
| Speyeria cybele | Speyeria | 102.0 | SNP,WGS,mtDNA | Europe, North America | ref_genome | |
| Speyeria leto | Speyeria | 102.0 | SNP,WGS,mtDNA | Europe, North America | ref_genome | |
| Abies nephrolepis | Abies | 98.0 | SNP | Europe, North America | none | |
| Setophaga striata | Setophaga | 96.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus bicolor | Quercus | 91.0 | RADseq | Europe, North America | ref_genome | |
| Populus euphratica | Populus | 91.0 | microsatellite | Europe, North America | ref_genome | |
| Lycaena hippothoe | Lycaena | 90.0 | microsatellite | Europe, North America | ref_genome | |
| Sphyrapicus varius | Sphyrapicus | 81.0 | mtDNA | Europe, North America | none | |
| Odocoileus hemionus | Odocoileus | 80.0 | SNP,mtDNA | Europe, North America | coords gbif ref_genome wgs_coords | VCFpopmapmetrics |
| Odocoileus deer | Odocoileus | 80.0 | SNP,mtDNA | Europe, North America | ref_genome | |
| Odocoileus virginianus | Odocoileus | 80.0 | SNP,mtDNA | Europe, North America | coords gbif ref_genome wgs_coords reduced_rep_coords | VCFpopmapG'STmetrics |
| Quercus spinosa | Quercus | 78.0 | SNP | Europe, North America | ref_genome | |
| Quercus aquifolioides | Quercus | 78.0 | SNP | Europe, North America | ref_genome | |
| Quercus rehderiana | Quercus | 78.0 | SNP | Europe, North America | ref_genome | |
| Coenonympha oedippus | Coenonympha | 77.0 | RADseq,mtDNA | Europe, North America | ref_genome | |
| Microtus richardsoni | Microtus | 75.0 | RADseq,WGS,mtDNA | Europe, North America | ref_genome | |
| Quercus gilva | Quercus | 75.0 | microsatellite | Europe, North America | ref_genome | |
| Bombus huntii | Bombus | 75.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus resinosa | Quercus | 72.0 | microsatellite | Europe, North America | ref_genome | |
| Quercus magnoliifolia | Quercus | 72.0 | microsatellite | Europe, North America | ref_genome | |
| Aedes albopictus | Aedes | 72.0 | mtDNA | Europe, North America | coords gbif ref_genome wgs_coords | |
| Peromyscus truei | Peromyscus | 66.0 | mtDNA | Europe, North America | ref_genome | |
| Microtus mexicanus | Microtus | 66.0 | mtDNA | Europe, North America | ref_genome | |
| Neotoma mexicana | Neotoma | 66.0 | mtDNA | Europe, North America | ref_genome | |
| Microtus mogollonensis | Microtus | 66.0 | mtDNA | Europe, North America | ref_genome | |
| Picea abies | Picea | 58.0 | mtDNA | Europe, North America | gbif ref_genome | |
| Coenonympha hero | Coenonympha | 57.0 | SNP | Europe, North America | ref_genome | |
| Coenonympha butterflies | Coenonympha | 54.0 | SNP | Europe, North America | ref_genome | |
| Quercus series | Quercus | 52.0 | microsatellite | Europe, North America | ref_genome | |
| Aedes japonicus | Aedes | 51.0 | microsatellite | Europe, North America | ref_genome | |
| Microtus montanus | Microtus | 50.0 | RADseq,WGS,mtDNA | Europe, North America | ref_genome | |
| Quercus pyrenaica | Quercus | 50.0 | microsatellite | Europe, North America | ref_genome | |
| Poecile rufescens | Poecile | 50.0 | mtDNA | Europe, North America | ref_genome | |
| Lycaena helle | Lycaena | 50.0 | microsatellite,mtDNA | Europe, North America | ref_genome | |
| Spermophilus pallidicauda | Spermophilus | 45.0 | mtDNA | Europe, North America | ref_genome | |
| Sitta carolinensis | Sitta | 45.0 | SNP | Europe, North America | ref_genome | |
| Thamnophis sirtalis | Thamnophis | 44.0 | SNP | Europe, North America | ref_genome | |
| Eptesicus fuscus | Eptesicus | 40.0 | RADseq | North America | ref_genome | |
| Juglans californica | Juglans | 39.0 | WGS | Europe, North America | ref_genome | |
| Juglans microcarpa | Juglans | 39.0 | WGS | Europe, North America | ref_genome | |
| Juglans nigra | Juglans | 39.0 | WGS | Europe, North America | ref_genome | |
| Juglans hindsii | Juglans | 39.0 | WGS | Europe, North America | ref_genome | |
| Trachemys hartwegi | Trachemys | 39.0 | microsatellite | Europe, North America | ref_genome | |
| Zonotrichia leucophrys | Zonotrichia | 38.0 | microsatellite | Europe, North America | ref_genome | |
| Juniperus phoenicea | Juniperus | 36.0 | microsatellite | Europe, North America | ref_genome | |
| Catharus ustulatus | Catharus | 36.0 | mtDNA | Europe, North America | ref_genome | |
| Pinus pumila | Pinus | 33.0 | SNP | Europe, North America | ref_genome | |
| Pinus parviflora | Pinus | 33.0 | SNP | Europe, North America | ref_genome | |
| Bombus vancouverensis | Bombus | 32.0 | WGS | Europe, North America | ref_genome | |
| Gopherus agassizii | Gopherus | 32.0 | SNP | Europe, North America | gbif ref_genome | |
| Apis mellifera | Apis | 30.0 | WGS,mtDNA | Europe, North America | coords gbif ref_genome wgs_coords | |
| Chrysemys picta | Chrysemys | 30.0 | microsatellite | Europe, North America | ref_genome | |
| Turdus assimilis | Turdus | 27.0 | mtDNA | Europe, North America | ref_genome | |
| Lycaena bleusei | Lycaena | 25.0 | mtDNA | Europe, North America | ref_genome | |
| Lycaena tityrus | Lycaena | 25.0 | mtDNA | Europe, North America | ref_genome | |
| Danio kyathit | Danio | 24.0 | microsatellite | Europe, North America | ref_genome |
| Dataset | Binomial | Type | Samples | Variants | Size | Downloads |
|---|---|---|---|---|---|---|
| acer_saccharum | Acer saccharum | clean_biallelic_snps | 1 | 9158129 | 325.3 MB | VCFpopmapG'STmetrics |
| biswas2026_truculentus_wgs | Thrigmopoeus truculentus | clean_biallelic_snps | 30 | 249885 | 20.0 MB | VCFG'STFST |
| bombus_balteatus_wgs | Bombus balteatus | clean_biallelic_snps | 40 | 7024680 | 589.6 MB | VCFpopmapmetrics |
| bombus_terrestris | Bombus terrestris | clean_biallelic_snps | 28 | 13612996 | 559.1 MB | VCFpopmapG'STmetrics |
| bono2018_reference | Sciurus aberti | clean_biallelic_snps | 92 | 125622 | 37.0 MB | VCFFST |
| bono2018_reference | Sciurus aberti | clean_biallelic_snps | 92 | 615320 | 126.8 MB | VCFFST |
| bono2018_stacks | Sciurus aberti | other | 92 | 70914 | 69.2 MB | VCF |
| canis_aureus | Canis aureus | clean_biallelic_snps | 6 | 13976432 | 466.8 MB | VCFpopmapG'STmetrics |
| desmognathus_wrighti | Desmognathus wrighti | clean_biallelic_snps | 14 | 834 | 2.7 MB | VCFpopmapG'STmetrics |
| fusco2024_carolinensis_full | Sciurus carolinensis | clean_biallelic_snps | 403 | 7588480 | 2.8 GB | VCFpopmapG'STFST |
| fusco2024_carolinensis_pilot | Sciurus carolinensis | clean_biallelic_snps | 50 | 174035 | 20.3 MB | VCFpopmapG'STFST |
| fusco2024_carolinensis_pilot | Sciurus carolinensis | clean_biallelic_snps | 50 | 2427587 | 317.3 MB | VCFpopmapG'STFST |
| gulo_gulo | Gulo gulo | clean_biallelic_snps | 12 | 1295424 | 53.6 MB | VCFpopmapG'STmetrics |
| juniperus_communis | Juniperus communis | clean_biallelic_snps | 6 | 2993523 | 75.3 MB | VCFpopmapG'STmetrics |
| lepus_americanus | Lepus americanus | clean_biallelic_snps | 10 | 35899274 | 1.1 GB | VCFpopmapG'STmetrics |
| lepus_californicus | Lepus californicus | clean_biallelic_snps | 5 | 72458961 | 2.9 GB | VCFpopmapG'STmetrics |
| lepus_europaeus | Lepus europaeus | clean_biallelic_snps | 3 | 30845573 | 1.1 GB | VCFpopmapG'STmetrics |
| lepus_timidus_wgs | Lepus timidus | raw_variants | 0 | 0.0 B | VCFpopmap | |
| odocoileus_hemionus_wgs | Odocoileus hemionus | clean_biallelic_snps | 29 | 37427568 | 2.4 GB | VCFpopmapmetrics |
| odocoileus_virginianus | Odocoileus virginianus | clean_biallelic_snps | 30 | 92802336 | 5.8 GB | VCFpopmapG'STmetrics |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | other | 110 | 37 | 97.9 KB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 10778 | 5.0 MB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 10931 | 1.1 MB | VCFpopmapG'STFST |
| pinus_flexilis_strobiformis_pilot | Pinus flexilis | stacks | 110 | 6267 | 744.8 KB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 7496 | 2.2 MB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 7588 | 540.5 KB | VCFpopmapG'STFST |
| pinus_pungens_rigida_pilot | Pinus pungens | stacks | 66 | 20361 | 1.3 MB | VCFpopmapG'STFST |
| plethodon_cinereus | Plethodon cinereus | clean_biallelic_snps | 3 | 316150 | 25.1 MB | VCFpopmapG'ST |
| plethodon_cinereus_wgs | Plethodon cinereus | raw_variants | 3 | 2223052 | 63.0 MB | VCFpopmapG'ST |
| populus_tremuloides | Populus tremuloides | clean_biallelic_snps | 1 | 10522216 | 307.8 MB | VCFpopmapG'STmetrics |
| quercus_canariensis_wgs | Quercus canariensis | clean_biallelic_snps | 2 | 15799925 | 529.1 MB | VCFpopmapmetrics |
| quercus_lobata | Quercus lobata | clean_biallelic_snps | 34 | 14638769 | 714.0 MB | VCFpopmapG'STmetrics |
| quercus_macrocarpa_wgs | Quercus macrocarpa | clean_biallelic_snps | 11 | 30498576 | 1.2 GB | VCFpopmapmetrics |
| quercus_rubra | Quercus rubra | clean_biallelic_snps | 29 | 52972777 | 3.5 GB | VCFpopmapG'STmetrics |
| quercus_rubra_wgs | Quercus rubra | other | 29 | 693115 | 32.6 MB | VCFpopmapG'STmetrics |
GET /api/catalog?q=...&genus=...&has_vcf=true&limit=100
GET /api/candidates
GET /api/facets
GET /api/vcfs
GET /api/download/<relative_path>